Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00684.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4089
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1116 original size:39 final size:39

Alignment explanation


    Indices: 1073--1149  Score: 118
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1063 CCCCAGTCAG

                              *  *                 
       1073 TCAACAAAATGCAAAATTTACTAGAATGCTTAGTGGGAT
          1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT

                       *               *          
       1112 TCAACAAAATGGAAAATTAACCAGAATTCTTAGTGGGA
          1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGA

       1150 CTGAAAGGAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  39   34  1.00

ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26


Consensus pattern (39 bp):   
TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
Done.