Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00695.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2319
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32


Found at i:2220 original size:14 final size:14

Alignment explanation


    Indices: 2201--2241  Score: 50
    Period size: 14  Copynumber: 3.0  Consensus size: 14

       2191 TTAGTCGGTC

                          
       2201 AACTTTTTTATTTT
          1 AACTTTTTTATTTT

                    *      
       2215 AACTTTTCATATTTT
          1 AACTTTT-TTATTTT

                          
       2230 -ACTTTTTT-TTTT
          1 AACTTTTTTATTTT

       2242 TCAATTTAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  12    4  0.17
  13    1  0.04
  14   13  0.54
  15    6  0.25

ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71


Consensus pattern (14 bp):   
AACTTTTTTATTTT
Done.