Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00701.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1213
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34


Found at i:1055 original size:23 final size:24

Alignment explanation


    Indices: 1029--1076  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1019 AGAAAAGAAC

                                    
       1029 AAACTGAAAC-AAAAAATTGTCCA
          1 AAACTGAAACAAAAAAATTGTCCA

                                    
       1052 AAACTGAAACAAAAAAATTGTCCA
          1 AAACTGAAACAAAAAAATTGTCCA

             
       1076 A
          1 A

       1077 CTGAGATTCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23   10  0.42
  24   14  0.58

ACGTcount: A:0.58, C:0.17, G:0.08, T:0.17


Consensus pattern (24 bp):   
AAACTGAAACAAAAAAATTGTCCA

Done.