Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00702.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5036
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41


Found at i:4063 original size:26 final size:26

Alignment explanation


    Indices: 4033--4085  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       4023 AAGGAAAAAC

                                      
       4033 TAAGTTTATTGAATTGAGAGGTTTGT
          1 TAAGTTTATTGAATTGAGAGGTTTGT

                                      
       4059 TAAGTTTATTGAATTGAGAGGTTTGT
          1 TAAGTTTATTGAATTGAGAGGTTTGT

             
       4085 T
          1 T

       4086 TTTGCTATAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47


Consensus pattern (26 bp):   
TAAGTTTATTGAATTGAGAGGTTTGT

Found at i:4752 original size:32 final size:32

Alignment explanation


    Indices: 4687--4752  Score: 78
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       4677 AGCCTTATCC

                      *  *           ** *   
       4687 CGCTAGTTTCGTGCCTTGCAAGCTTTGCGTCT
          1 CGCTAGTTTCATGACTTGCAAGCTTCACCTCT

                               *            
       4719 CGCTAGTTTCATGACTTGCTAGCTTCACCTCT
          1 CGCTAGTTTCATGACTTGCAAGCTTCACCTCT

              
       4751 CG
          1 CG

       4753 TTACTTTTGC


Statistics
Matches: 28,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  32   28  1.00

ACGTcount: A:0.12, C:0.30, G:0.21, T:0.36


Consensus pattern (32 bp):   
CGCTAGTTTCATGACTTGCAAGCTTCACCTCT

Found at i:5007 original size:17 final size:18

Alignment explanation


    Indices: 4987--5020  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       4977 CATATCATTA

                *             
       4987 AATATATAT-TTTATGTG
          1 AATAAATATGTTTATGTG

                             
       5004 AATAAATATGTTTATGT
          1 AATAAATATGTTTATGT

       5021 TACATATATG


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50


Consensus pattern (18 bp):   
AATAAATATGTTTATGTG

Done.