Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00703.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3081
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30


Found at i:1695 original size:3 final size:3

Alignment explanation


    Indices: 1689--1725  Score: 56
    Period size: 3  Copynumber: 12.3  Consensus size: 3

       1679 AGTTTCCATG

                          *                   *              
       1689 TCA TCA TCA TCG TCA TCA TCA TCA TCG TCA TCA TCA T
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T

       1726 GCCGTTGCCT


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.27, C:0.32, G:0.05, T:0.35


Consensus pattern (3 bp):   
TCA

Found at i:1707 original size:15 final size:15

Alignment explanation


    Indices: 1689--1725  Score: 74
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1679 AGTTTCCATG

                           
       1689 TCATCATCATCGTCA
          1 TCATCATCATCGTCA

                           
       1704 TCATCATCATCGTCA
          1 TCATCATCATCGTCA

                   
       1719 TCATCAT
          1 TCATCAT

       1726 GCCGTTGCCT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.27, C:0.32, G:0.05, T:0.35


Consensus pattern (15 bp):   
TCATCATCATCGTCA

Done.