Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00704.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2578
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32


Found at i:1376 original size:15 final size:15

Alignment explanation


    Indices: 1356--1392  Score: 74
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1346 AGGCAACGGC

                           
       1356 ATGATGATGACGATG
          1 ATGATGATGACGATG

                           
       1371 ATGATGATGACGATG
          1 ATGATGATGACGATG

                   
       1386 ATGATGA
          1 ATGATGA

       1393 CATGGAAACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27


Consensus pattern (15 bp):   
ATGATGATGACGATG

Found at i:1408 original size:3 final size:3

Alignment explanation


    Indices: 1356--1392  Score: 56
    Period size: 3  Copynumber: 12.3  Consensus size: 3

       1346 AGGCAACGGC

                         *                   *               
       1356 ATG ATG ATG ACG ATG ATG ATG ATG ACG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

       1393 CATGGAAACT


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27


Consensus pattern (3 bp):   
ATG
Done.