Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00705.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5286
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:3446 original size:77 final size:77

Alignment explanation


    Indices: 3335--3484  Score: 291
    Period size: 77  Copynumber: 1.9  Consensus size: 77

       3325 TACTGATGTG

                  *                                                          
       3335 CCATGATATATAACCAGAAGATCCTCTGTAGGAATCTTTCTGATTCAAGGTACTAGTGCAAATTT
          1 CCATGACATATAACCAGAAGATCCTCTGTAGGAATCTTTCTGATTCAAGGTACTAGTGCAAATTT

                        
       3400 GAAGAGATTTTA
         66 GAAGAGATTTTA

                                                                             
       3412 CCATGACATATAACCAGAAGATCCTCTGTAGGAATCTTTCTGATTCAAGGTACTAGTGCAAATTT
          1 CCATGACATATAACCAGAAGATCCTCTGTAGGAATCTTTCTGATTCAAGGTACTAGTGCAAATTT

                    
       3477 GAAGAGAT
         66 GAAGAGAT

       3485 CTTATACTAT


Statistics
Matches: 72,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  77   72  1.00

ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31


Consensus pattern (77 bp):   
CCATGACATATAACCAGAAGATCCTCTGTAGGAATCTTTCTGATTCAAGGTACTAGTGCAAATTT
GAAGAGATTTTA
Done.