Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00708.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1372
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26


Found at i:991 original size:3 final size:3

Alignment explanation


    Indices: 985--1014  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        975 ACAACAACAA

                                             *     
        985 CAG CAG CAG CAG CAG CAG CAG CAG CTG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG

       1015 ATGCCTCATT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.30, C:0.33, G:0.33, T:0.03


Consensus pattern (3 bp):   
CAG

Done.