Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00712.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5961
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31


Found at i:457 original size:22 final size:22

Alignment explanation


    Indices: 430--473  Score: 79
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        420 GCGACACCAA

                  *               
        430 AAATACGTTTTGGAACCTTAAC
          1 AAATACATTTTGGAACCTTAAC

                                  
        452 AAATACATTTTGGAACCTTAAC
          1 AAATACATTTTGGAACCTTAAC

        474 TTAAGGGTTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32


Consensus pattern (22 bp):   
AAATACATTTTGGAACCTTAAC
Done.