Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00520.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3511
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1237 original size:21 final size:21

Alignment explanation


    Indices: 1213--1255  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1203 TCAGCTCTCT

                                  
       1213 GGCCATCTTCCAT-CAAACATG
          1 GGCC-TCTTCCATCCAAACATG

                 *    *          
       1234 GGCCTTTTCCTTCCAAACATG
          1 GGCCTCTTCCATCCAAACATG

             
       1255 G
          1 G

       1256 AGAAATTATA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  20    6  0.32
  21   13  0.68

ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28


Consensus pattern (21 bp):   
GGCCTCTTCCATCCAAACATG
Done.