Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00713.N29

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2314
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:120 original size:17 final size:17

Alignment explanation


    Indices: 95--127  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

         85 AAAATTTAGC

                             
         95 TACTCTTTTTCTCTCGT
          1 TACTCTTTTTCTCTCGT

                *           
        112 TACTGTTTTTCTCTCG
          1 TACTCTTTTTCTCTCG

        128 ATCCTTCGTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.06, C:0.27, G:0.09, T:0.58


Consensus pattern (17 bp):   
TACTCTTTTTCTCTCGT
Done.