Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00714.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1192
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:1099 original size:21 final size:21

Alignment explanation


    Indices: 1073--1115  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1063 CTACGTGACA

                                 
       1073 AATTAACTGGCCACATCAGCT
          1 AATTAACTGGCCACATCAGCT

                         **      
       1094 AATTAACTGGCCATGTCAGCT
          1 AATTAACTGGCCACATCAGCT

             
       1115 A
          1 A

       1116 TTCCGTTAAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26


Consensus pattern (21 bp):   
AATTAACTGGCCACATCAGCT
Done.