Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00523.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2175
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30


Found at i:978 original size:14 final size:15

Alignment explanation


    Indices: 954--982  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        944 GTTACTGTTA

                           
        954 TGGTAGTTTGCCTTG
          1 TGGTAGTTTGCCTTG

                           
        969 TGGT-GTTTGCCTTG
          1 TGGTAGTTTGCCTTG

        983 AAGCTTAAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.03, C:0.14, G:0.34, T:0.48


Consensus pattern (15 bp):   
TGGTAGTTTGCCTTG
Done.