Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00733.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1650
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:916 original size:27 final size:27

Alignment explanation


    Indices: 878--930  Score: 106
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        868 CGAACAAGCC

                                       
        878 AAGAAATTCGGTGTTACAGAGTTTGTA
          1 AAGAAATTCGGTGTTACAGAGTTTGTA

                                      
        905 AAGAAATTCGGTGTTACAGAGTTTGT
          1 AAGAAATTCGGTGTTACAGAGTTTGT

        931 GAATCCAAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34


Consensus pattern (27 bp):   
AAGAAATTCGGTGTTACAGAGTTTGTA
Done.