Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00733.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 580

Length: 968
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32


Found at i:919 original size:11 final size:11

Alignment explanation


    Indices: 891--943  Score: 52
    Period size: 11  Copynumber: 4.8  Consensus size: 11

        881 CCTAGCTCAC

                      *
        891 TGCTGTTTTGC
          1 TGCTGTTTTGG

              *     *  
        902 TGTTGTTTGGG
          1 TGCTGTTTTGG

                       
        913 TGCTGTTTTGG
          1 TGCTGTTTTGG

                *     *
        924 TGCTATTTTGC
          1 TGCTGTTTTGG

                *    
        935 TGCTATTTT
          1 TGCTGTTTT

        944 TTGTCGTGTT


Statistics
Matches: 35,  Mismatches: 7, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  11   35  1.00

ACGTcount: A:0.04, C:0.11, G:0.28, T:0.57


Consensus pattern (11 bp):   
TGCTGTTTTGG

Done.