Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00747.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3896
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28


Found at i:1242 original size:15 final size:15

Alignment explanation


    Indices: 1224--1259  Score: 63
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       1214 GTTTTTGCAT

                           
       1224 CAGCAGCAACAACAG
          1 CAGCAGCAACAACAG

                       *   
       1239 CAGCAGCAACAGCAG
          1 CAGCAGCAACAACAG

                  
       1254 CAGCAG
          1 CAGCAG

       1260 TTGCTCCAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.42, C:0.33, G:0.25, T:0.00


Consensus pattern (15 bp):   
CAGCAGCAACAACAG

Found at i:1256 original size:12 final size:12

Alignment explanation


    Indices: 1224--1258  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       1214 GTTTTTGCAT

                    *   
       1224 CAGCAGCAACAA
          1 CAGCAGCAGCAA

                        
       1236 CAGCAGCAGCAA
          1 CAGCAGCAGCAA

                       
       1248 CAGCAGCAGCA
          1 CAGCAGCAGCA

       1259 GTTGCTCCAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.43, C:0.34, G:0.23, T:0.00


Consensus pattern (12 bp):   
CAGCAGCAGCAA
Done.