Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00768.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1675
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28


Found at i:1289 original size:37 final size:37

Alignment explanation


    Indices: 1248--1323  Score: 143
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       1238 AAGGATGGCC

                            *                    
       1248 AAAAGGAGGAACTAGTTGCAGTTTCTTACCTTGCTAA
          1 AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA

                                                 
       1285 AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA
          1 AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA

              
       1322 AA
          1 AA

       1324 GATGCTTAAA


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Consensus pattern (37 bp):   
AAAAGGAGGAACTAGTCGCAGTTTCTTACCTTGCTAA
Done.