Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00770.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3984
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40


Found at i:1387 original size:29 final size:29

Alignment explanation


    Indices: 1345--1401  Score: 71
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1335 AACTGTCGAT

                  *  *                    
       1345 GCCACATGGTCATGTGCT-AGACCGTGTGA
          1 GCCACACGGGCATGT-CTGAGACCGTGTGA

                                  *     
       1374 GCCACACGGGCATGTCTGAGACTGTGTG
          1 GCCACACGGGCATGTCTGAGACCGTGTG

       1402 GGTGACACGG


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  28    2  0.08
  29   22  0.92

ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23


Consensus pattern (29 bp):   
GCCACACGGGCATGTCTGAGACCGTGTGA
Done.