Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00779.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26


Found at i:990 original size:13 final size:13

Alignment explanation


    Indices: 972--1032  Score: 95
    Period size: 13  Copynumber: 4.7  Consensus size: 13

        962 AGTTTGGCAA

                         
        972 TGCTTTTGAGAAG
          1 TGCTTTTGAGAAG

                         
        985 TGCTTTTGAGAAG
          1 TGCTTTTGAGAAG

                * *  *   
        998 TGCTGTGGAAAAG
          1 TGCTTTTGAGAAG

                         
       1011 TGCTTTTGAGAAG
          1 TGCTTTTGAGAAG

                     
       1024 TGCTTTTGA
          1 TGCTTTTGA

       1033 AAAATTTAAG


Statistics
Matches: 42,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  13   42  1.00

ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38


Consensus pattern (13 bp):   
TGCTTTTGAGAAG

Done.