Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00789.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1898
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:772 original size:21 final size:21

Alignment explanation


    Indices: 748--789  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        738 AAATTGGTAT

                                  
        748 TTGGT-TTCTTGGGTGCTTTTG
          1 TTGGTGTT-TTGGGTGCTTTTG

                        *        
        769 TTGGTGTTTTGGTTGCTTTTG
          1 TTGGTGTTTTGGGTGCTTTTG

        790 CACTGATAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.00, C:0.07, G:0.33, T:0.60


Consensus pattern (21 bp):   
TTGGTGTTTTGGGTGCTTTTG
Done.