Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00792.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6373
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38


Found at i:3758 original size:21 final size:21

Alignment explanation


    Indices: 3734--3775  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3724 ATTTTCAAAT

                        *        
       3734 TAATTACACATTGATTTGTAA
          1 TAATTACACATTAATTTGTAA

                 *  *            
       3755 TAATTGCATATTAATTTGTAA
          1 TAATTACACATTAATTTGTAA

       3776 ATTTTTGTGT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45


Consensus pattern (21 bp):   
TAATTACACATTAATTTGTAA

Found at i:5243 original size:32 final size:32

Alignment explanation


    Indices: 5202--5282  Score: 108
    Period size: 32  Copynumber: 2.5  Consensus size: 32

       5192 TTGAAATTAG

                      *          *          
       5202 TTTGTTAGATTTTGAAATTATTATGTTTTAAA
          1 TTTGTTAGATATTGAAATTATAATGTTTTAAA

                            *              *
       5234 TTTGTTAGATATTGAATTTATAATGTTTTAAG
          1 TTTGTTAGATATTGAAATTATAATGTTTTAAA

            *     *          
       5266 CTTGTTGGATATTGAAA
          1 TTTGTTAGATATTGAAA

       5283 CAATTAATAA


Statistics
Matches: 42,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  32   42  1.00

ACGTcount: A:0.31, C:0.01, G:0.16, T:0.52


Consensus pattern (32 bp):   
TTTGTTAGATATTGAAATTATAATGTTTTAAA
Done.