Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00796.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:163 original size:16 final size:16

Alignment explanation


    Indices: 142--172  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        132 CAAGATCACT

                            
        142 TATCTGCAGTCTGTTA
          1 TATCTGCAGTCTGTTA

                           
        158 TATCTGCAGTCTGTT
          1 TATCTGCAGTCTGTT

        173 TTTCCCAGCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45


Consensus pattern (16 bp):   
TATCTGCAGTCTGTTA

Found at i:703 original size:9 final size:9

Alignment explanation


    Indices: 686--715  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        676 ACTATTTGTT

                *    
        686 ATTTTCCGA
          1 ATTTACCGA

                     
        695 ATTTACCGA
          1 ATTTACCGA

                     
        704 ATTTACCGA
          1 ATTTACCGA

               
        713 ATT
          1 ATT

        716 GTTTTCCTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40


Consensus pattern (9 bp):   
ATTTACCGA
Done.