Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00804.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5114
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28


Found at i:2360 original size:13 final size:13

Alignment explanation


    Indices: 2342--2367  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2332 ATAATTATCT

                         
       2342 ATAGAAATGAAAA
          1 ATAGAAATGAAAA

                         
       2355 ATAGAAATGAAAA
          1 ATAGAAATGAAAA

       2368 CAGTTAAAAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15


Consensus pattern (13 bp):   
ATAGAAATGAAAA
Done.