Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00806.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Found at i:835 original size:135 final size:134

Alignment explanation


    Indices: 594--861  Score: 518
    Period size: 135  Copynumber: 2.0  Consensus size: 134

        584 GGTTGAGTAG

                                       *                                     
        594 TCTCCCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA
          1 TCTCCCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA

                                                                             
        659 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGT
         66 TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGT

                
        724 ACCT
        131 ACCT

                                                                             
        728 TCTCCCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCC
          1 TCTCCCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCC

                                                                             
        793 ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAG
         65 ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAG

                
        858 TACC
        130 TACC

        862 ACTGTTACCT


Statistics
Matches: 132,  Mismatches: 1, Indels: 1
        0.99            0.01        0.01

Matches are distributed among these distances:
 134   24  0.18
 135  108  0.82

ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32


Consensus pattern (134 bp):   
TCTCCCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCA
TACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGT
ACCT
Done.