Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00808.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1707
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37


Found at i:1025 original size:15 final size:15

Alignment explanation


    Indices: 1001--1057  Score: 55
    Period size: 15  Copynumber: 3.8  Consensus size: 15

        991 AATTCTGAAT

                 *         
       1001 AGATATTAATTTAAA
          1 AGATAATAATTTAAA

                           
       1016 AGATAATAATTTAAA
          1 AGATAATAATTTAAA

            *                
       1031 TGA-AGATAATCTTAAA
          1 AGATA-ATAAT-TTAAA

             *          
       1047 ATAT-ATAATTT
          1 AGATAATAATTT

       1058 TTTTGACACT


Statistics
Matches: 35,  Mismatches: 4, Indels: 7
        0.76            0.09        0.15

Matches are distributed among these distances:
  14    3  0.09
  15   26  0.74
  16    6  0.17

ACGTcount: A:0.53, C:0.02, G:0.07, T:0.39


Consensus pattern (15 bp):   
AGATAATAATTTAAA
Done.