Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00809.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1875
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31


Found at i:364 original size:26 final size:26

Alignment explanation


    Indices: 327--410  Score: 150
    Period size: 26  Copynumber: 3.2  Consensus size: 26

        317 TGATACAAAT

                   *               *  
        327 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        353 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        379 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        405 TGATAA
          1 TGATAA

        411 GAATTTCATG


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   56  1.00

ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Found at i:1805 original size:15 final size:15

Alignment explanation


    Indices: 1785--1814  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1775 ATTCTGTTAT

                     *     
       1785 CTGTTTGTGTGCATG
          1 CTGTTTGTGGGCATG

                           
       1800 CTGTTTGTGGGCATG
          1 CTGTTTGTGGGCATG

       1815 TACACACTGA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.07, C:0.13, G:0.37, T:0.43


Consensus pattern (15 bp):   
CTGTTTGTGGGCATG
Done.