Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00810.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 864

Length: 1440
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32


Found at i:200 original size:16 final size:16

Alignment explanation


    Indices: 179--215  Score: 56
    Period size: 16  Copynumber: 2.3  Consensus size: 16

        169 TTTCTGTGCT

                            
        179 AGAGACAGAGAGAGAG
          1 AGAGACAGAGAGAGAG

                      * *   
        195 AGAGACAGAGGGGGAG
          1 AGAGACAGAGAGAGAG

                 
        211 AGAGA
          1 AGAGA

        216 GAGGGGTGGG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.46, C:0.05, G:0.49, T:0.00


Consensus pattern (16 bp):   
AGAGACAGAGAGAGAG
Done.