Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00818.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1865
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:544 original size:26 final size:26

Alignment explanation


    Indices: 492--544  Score: 63
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        482 TTTACAGTTT

                                *     
        492 TACCCCTAGGAGATAAATTATCGAAA
          1 TACCCCTAGGAGATAAATTACCGAAA

                        *          *   
        518 TACCCCTAGG-GTTAAATTGACCTAAA
          1 TACCCCTAGGAGATAAATT-ACCGAAA

             
        544 T
          1 T

        545 GCATGTTTGA


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  25    7  0.30
  26   16  0.70

ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26


Consensus pattern (26 bp):   
TACCCCTAGGAGATAAATTACCGAAA
Done.