Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00858.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4840
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:2175 original size:67 final size:67

Alignment explanation


    Indices: 2092--2233  Score: 250
    Period size: 67  Copynumber: 2.1  Consensus size: 67

       2082 TTGAATTGTA

                                                                   *         
       2092 TATTGCTTTAAGGACTTCTGTATTTACTTGTTTGTAACTCAAAA-ATTTTGATTGTACTTATCCA
          1 TATTGCTTTAAGGACTTCTGTATTTACTTGTTTGTAACT-AAAACATTTTGATTGAACTTATCCA

               
       2156 TAG
         65 TAG

                                                                          *  
       2159 TATTGCTTTAAGGACTTCTGTATTTACTTGTTTGTAACTAAAACATTTTGATTGAACTTATCTAT
          1 TATTGCTTTAAGGACTTCTGTATTTACTTGTTTGTAACTAAAACATTTTGATTGAACTTATCCAT

              
       2224 AG
         66 AG

                    
       2226 TATTGCTT
          1 TATTGCTT

       2234 GGATAGTTGT


Statistics
Matches: 72,  Mismatches: 2, Indels: 2
        0.95            0.03        0.03

Matches are distributed among these distances:
  66    4  0.06
  67   68  0.94

ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47


Consensus pattern (67 bp):   
TATTGCTTTAAGGACTTCTGTATTTACTTGTTTGTAACTAAAACATTTTGATTGAACTTATCCAT
AG
Done.