Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00860.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2772
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:1460 original size:6 final size:6

Alignment explanation


    Indices: 1446--1499  Score: 81
    Period size: 6  Copynumber: 9.0  Consensus size: 6

       1436 AACGGAAGAG

                *                                     *       *    
       1446 AGTGGA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA GGTGAA ACTGAA
          1 AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA

                  
       1494 AGTGAA
          1 AGTGAA

       1500 GAGGCAACTG


Statistics
Matches: 43,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   43  1.00

ACGTcount: A:0.46, C:0.02, G:0.35, T:0.17


Consensus pattern (6 bp):   
AGTGAA

Done.