Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00862.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 581

Length: 969
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25


Found at i:508 original size:156 final size:153

Alignment explanation


    Indices: 196--508  Score: 353
    Period size: 156  Copynumber: 2.0  Consensus size: 153

        186 TTTTCAATGA

                         **                                      * *     *   
        196 GAGGACAAAAATGTGGACAAAGTAGAGTGCGAGAATGAGAAGAAGCAAGAACCGTCTTCGGCAAA
          1 GAGGACAAAAATGCAGACAAAGTAGAGTGCGAGAATGAGAAGAAGCAAGAACCATATTCGGAAAA

                          *      *   **          *     *             *       
        261 TAAACAGAACAACTGTATGCATGCAGTAGAGACAATTTCAAGGGAGCCCCTTGCTTCTAGTAACG
         66 TAAACAGAACAACTATATGCACGCAACAGAGACAATTGCAAGGAAGCCCCTTGCTTCAAGTAACG

                                   
        326 GAGAGAAATCTGCTACGAAGGGT
        131 GAGAGAAATCTGCTACGAAGGGT

                 *               *       *  *                         *      
        349 GAGGATAAAAATGCAGACAAATTAGAGTGTGATAATGAGAAGAAGCAAGAACCATATTTGGAAAA
          1 GAGGACAAAAATGCAGACAAAGTAGAGTGCGAGAATGAGAAGAAGCAAGAACCATATTCGGAAAA

                       *                          *                          
        414 TAAACAGGACGCCAA-TCATATGCACGCAACAGAGACAGTTGCAAGGAAGCCCCTTGCTTCAAGT
         66 TAAACA-GA--ACAACT-ATATGCACGCAACAGAGACAATTGCAAGGAAGCCCCTTGCTTCAAGT

             **         *                
        478 AGTGCGA-AGAAGTCTTG-TACGAAGGGT
        127 AACG-GAGAGAAATC-TGCTACGAAGGGT

                
        505 GAGG
          1 GAGG

        509 TAGCGAATTC


Statistics
Matches: 132,  Mismatches: 22, Indels: 9
        0.81            0.13        0.06

Matches are distributed among these distances:
 153   61  0.46
 154    2  0.02
 155    1  0.01
 156   64  0.48
 157    4  0.03

ACGTcount: A:0.39, C:0.16, G:0.27, T:0.18


Consensus pattern (153 bp):   
GAGGACAAAAATGCAGACAAAGTAGAGTGCGAGAATGAGAAGAAGCAAGAACCATATTCGGAAAA
TAAACAGAACAACTATATGCACGCAACAGAGACAATTGCAAGGAAGCCCCTTGCTTCAAGTAACG
GAGAGAAATCTGCTACGAAGGGT
Done.