Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00863.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1896
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:87 original size:2 final size:2

Alignment explanation


    Indices: 74--104  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

         64 CAACAGAAGA

                   *                                      
         74 TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

        105 AGCTGGTGTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55


Consensus pattern (2 bp):   
TC

Done.