Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00885.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1935
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27


Found at i:164 original size:23 final size:24

Alignment explanation


    Indices: 130--174  Score: 65
    Period size: 23  Copynumber: 1.9  Consensus size: 24

        120 TCCCTTGTTG

                           *        
        130 CCCTCCGACCCC-CACAATTCCAT
          1 CCCTCCGACCCCTCAAAATTCCAT

                   *              
        153 CCCTCCGCCCCCTCAAAATTCC
          1 CCCTCCGACCCCTCAAAATTCC

        175 CGAAAATGTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  23   11  0.58
  24    8  0.42

ACGTcount: A:0.20, C:0.58, G:0.04, T:0.18


Consensus pattern (24 bp):   
CCCTCCGACCCCTCAAAATTCCAT
Done.