Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00910.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2238
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39


Found at i:1270 original size:7 final size:7

Alignment explanation


    Indices: 1258--1284  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       1248 TATGCATGAG

                   
       1258 TGTGAAC
          1 TGTGAAC

                   
       1265 TGTGAAC
          1 TGTGAAC

                   
       1272 TGTGAAC
          1 TGTGAAC

                  
       1279 TGTGAA
          1 TGTGAA

       1285 TACAGCTAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30


Consensus pattern (7 bp):   
TGTGAAC

Found at i:1719 original size:13 final size:13

Alignment explanation


    Indices: 1701--1727  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1691 GTCTAGTCAA

                         
       1701 TGTGAATTTTACC
          1 TGTGAATTTTACC

                         
       1714 TGTGAATTTTACC
          1 TGTGAATTTTACC

             
       1727 T
          1 T

       1728 TCATTTGAAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48


Consensus pattern (13 bp):   
TGTGAATTTTACC
Done.