Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00911.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4492
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:1143 original size:26 final size:26

Alignment explanation


    Indices: 1114--1165  Score: 77
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1104 TTTAGTTTCC

                            **        
       1114 TTAATTGTAGTTTCTTTTTCTACAAG
          1 TTAATTGTAGTTTCTTAGTCTACAAG

                  *                   
       1140 TTAATTTTAGTTTCTTAGTCTACAAG
          1 TTAATTGTAGTTTCTTAGTCTACAAG

       1166 AATAAAATCC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  26   23  1.00

ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52


Consensus pattern (26 bp):   
TTAATTGTAGTTTCTTAGTCTACAAG
Done.