Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00544.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3605
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29


Found at i:1306 original size:219 final size:219

Alignment explanation


    Indices: 927--2241  Score: 1970
    Period size: 219  Copynumber: 6.0  Consensus size: 219

        917 CCTAACAGGA

                                                                             
        927 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                  *  *                                      *                
        992 GCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAATACATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                *                                                            
       1057 ATAACAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

                             *      
       1122 CTCGACAACAACCTGTTTGAAGGT
        196 CTCGACAACAACCTGTTCGAAGGT

                          *                                                  
       1146 GAGATCCCATCCAACATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                                                           ** *              
       1211 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGTTTTCATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                                                                  **  *      
       1276 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTACAAAACTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

               *                    
       1341 CTCTACAACAACCTGTTCGAAGGT
        196 CTCGACAACAACCTGTTCGAAGGT

                                     *                *          *           
       1365 GAGATCCCATCCAATATGTTTGATCGTCTACCTAGATTGCAAGAGCTTTACTTAGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                 **  *           *                          *                
       1430 GCTCTTTGGCAAAATTCCATTAGGTTTATTCAAGTGCAAAGAGTTAGAATACATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                      *                                                      
       1495 ATAATAGGTTCGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

               *                   *
       1560 CTCTACAACAACCTGTTCGAAGGA
        196 CTCGACAACAACCTGTTCGAAGGT

                                             *  *                            
       1584 GAGATCCCATCCAATATGTTTGATCATCTACCTGGACTGCAACAGCTTTACTTGGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                   * *                                     *  *              
       1649 GCTCTCCAGTAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGTGTTCATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                                                                     *       
       1714 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAGTCTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

                                    
       1779 CTCGACAACAACCTGTTCGAAGGT
        196 CTCGACAACAACCTGTTCGAAGGT

              *  *                        *                       *          
       1803 GAAATACCATCCAATATGTTTGATCATCTAGCTAGATTGCAACAGCTTTACTTGAAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

               *     *           *                           *     **    *   
       1868 GCTTTCCGGTAAAATTCCATTAGGTTTATTCAAGTGCAAAGAGTTAGAGGACATAGGCTTCAG-T
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTT-GGCT

            **                                                     *  *      
       1932 TCTAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAAGACTCTATA
        130 GATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATA

                    *         *      
       1997 TCTCGACATCAACCTGTTTGAAGGT
        195 TCTCGACAACAACCTGTTCGAAGGT

                          *                *           **     *     ** *     
       2022 GAGATCCCAT-CAGGTATGTTTGATCATCTATCTAGATTGCAAGTGCTTTTCTTGGGTGAGAACA
          1 GAGATCCCATCCA-ATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACA

                   *               *       *           *         *           
       2086 AGCTCTCTGGAAAAATTCCATTGAGTTTATTTAAGTGCAAAGAATTAGAAG-ATATATCCTTGGC
         65 AGCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAG-AGTACATATCCTTGGC

             *          *                 *                         *  *     
       2150 TCATAATAGGTTAGAAGGGATTCTACCAAATGAAATAGGAAACTTGACAATGCTTAAGAGTCTAT
        129 TGATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTAT

                *           *         
       2215 ATCTGGACAACAACCTATTCGAAGGT
        194 ATCTCGACAACAACCTGTTCGAAGGT

             
       2241 G
          1 G

       2242 TCATCCCAAA


Statistics
Matches: 995,  Mismatches: 97, Indels: 8
        0.90            0.09        0.01

Matches are distributed among these distances:
 218    3  0.00
 219  989  0.99
 220    3  0.00

ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Consensus pattern (219 bp):   
GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA
GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG
ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT
CTCGACAACAACCTGTTCGAAGGT

Done.