Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00544.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2804
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:505 original size:219 final size:219

Alignment explanation


    Indices: 126--1440  Score: 1970
    Period size: 219  Copynumber: 6.0  Consensus size: 219

        116 TCTTGCAGGA

                                                                             
        126 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                  *  *                                      *                
        191 GCTCTCTGGCAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAATACATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                *                                                            
        256 ATAACAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

                             *      
        321 CTCGACAACAACCTGTTTGAAGGT
        196 CTCGACAACAACCTGTTCGAAGGT

                          *                                                  
        345 GAGATCCCATCCAACATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                                                           ** *              
        410 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGTTTTCATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                                                                  **  *      
        475 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTACAAAACTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

               *                    
        540 CTCTACAACAACCTGTTCGAAGGT
        196 CTCGACAACAACCTGTTCGAAGGT

                                     *                *          *           
        564 GAGATCCCATCCAATATGTTTGATCGTCTACCTAGATTGCAAGAGCTTTACTTAGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                 **  *           *                          *                
        629 GCTCTTTGGCAAAATTCCATTAGGTTTATTCAAGTGCAAAGAGTTAGAATACATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                      *                                                      
        694 ATAATAGGTTCGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

               *                   *
        759 CTCTACAACAACCTGTTCGAAGGA
        196 CTCGACAACAACCTGTTCGAAGGT

                                             *  *                            
        783 GAGATCCCATCCAATATGTTTGATCATCTACCTGGACTGCAACAGCTTTACTTGGAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

                   * *                                     *  *              
        848 GCTCTCCAGTAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGTGTTCATATCCTTGGCTG
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG

                                                                     *       
        913 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAGTCTATAT
        131 ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT

                                    
        978 CTCGACAACAACCTGTTCGAAGGT
        196 CTCGACAACAACCTGTTCGAAGGT

              *  *                        *                       *          
       1002 GAAATACCATCCAATATGTTTGATCATCTAGCTAGATTGCAACAGCTTTACTTGAAAGGGAACAA
          1 GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA

               *     *           *                           *     **    *   
       1067 GCTTTCCGGTAAAATTCCATTAGGTTTATTCAAGTGCAAAGAGTTAGAGGACATAGGCTTCAG-T
         66 GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTT-GGCT

            **                                                     *  *      
       1131 TCTAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAAGACTCTATA
        130 GATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATA

                    *         *      
       1196 TCTCGACATCAACCTGTTTGAAGGT
        195 TCTCGACAACAACCTGTTCGAAGGT

                          *                *           **     *     ** *     
       1221 GAGATCCCAT-CAGGTATGTTTGATCATCTATCTAGATTGCAAGTGCTTTTCTTGGGTGAGAACA
          1 GAGATCCCATCCA-ATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACA

                   *               *       *           *         *           
       1285 AGCTCTCTGGAAAAATTCCATTGAGTTTATTTAAGTGCAAAGAATTAGAAG-ATATATCCTTGGC
         65 AGCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAG-AGTACATATCCTTGGC

             *          *                 *                         *  *     
       1349 TCATAATAGGTTAGAAGGGATTCTACCAAATGAAATAGGAAACTTGACAATGCTTAAGAGTCTAT
        129 TGATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTAT

                *           *         
       1414 ATCTGGACAACAACCTATTCGAAGGT
        194 ATCTCGACAACAACCTGTTCGAAGGT

             
       1440 G
          1 G

       1441 TCATCCCAAA


Statistics
Matches: 995,  Mismatches: 97, Indels: 8
        0.90            0.09        0.01

Matches are distributed among these distances:
 218    3  0.00
 219  989  0.99
 220    3  0.00

ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Consensus pattern (219 bp):   
GAGATCCCATCCAATATGTTTGATCATCTACCTAGATTGCAACAGCTTTACTTGGAAGGGAACAA
GCTCTCCGGAAAAATTCCATTGGGTTTATTCAAGTGCAAAGAGTTAGAGTACATATCCTTGGCTG
ATAATAGGTTGGAAGGGATTCTACCAAAAGAAATAGGAAACTTGACAATGCTTAGGAATCTATAT
CTCGACAACAACCTGTTCGAAGGT

Done.