Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00917.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2761
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30


Found at i:55 original size:5 final size:5

Alignment explanation


    Indices: 48--89  Score: 75
    Period size: 5  Copynumber: 8.4  Consensus size: 5

         38 GAGAAAAAGA

                *                                             
         48 TGAGA TGAGG TGAGG TGAGG TGAGG TGAGG TGAGG TGAGG TG
          1 TGAGG TGAGG TGAGG TGAGG TGAGG TGAGG TGAGG TGAGG TG

         90 TGCAACCGTA


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   5   36  1.00

ACGTcount: A:0.21, C:0.00, G:0.57, T:0.21


Consensus pattern (5 bp):   
TGAGG

Done.