Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00919.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2833
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:2659 original size:68 final size:68

Alignment explanation


    Indices: 2550--2686  Score: 274
    Period size: 68  Copynumber: 2.0  Consensus size: 68

       2540 TTTGCACAGA

                                                                             
       2550 TAGTAGAATGATGCAATATGTAGGTAAATCGTTCTTATGCAAATTGGTAGTGAAAATCTTTCCCA
          1 TAGTAGAATGATGCAATATGTAGGTAAATCGTTCTTATGCAAATTGGTAGTGAAAATCTTTCCCA

               
       2615 ACG
         66 ACG

                                                                             
       2618 TAGTAGAATGATGCAATATGTAGGTAAATCGTTCTTATGCAAATTGGTAGTGAAAATCTTTCCCA
          1 TAGTAGAATGATGCAATATGTAGGTAAATCGTTCTTATGCAAATTGGTAGTGAAAATCTTTCCCA

               
       2683 ACG
         66 ACG

             
       2686 T
          1 T

       2687 TGCAAATCGG


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  68   69  1.00

ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33


Consensus pattern (68 bp):   
TAGTAGAATGATGCAATATGTAGGTAAATCGTTCTTATGCAAATTGGTAGTGAAAATCTTTCCCA
ACG
Done.