Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00921.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2189
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34


Found at i:240 original size:17 final size:18

Alignment explanation


    Indices: 210--243  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        200 GCGAGAAACT

                              
        210 TTAGAGTTTCAATTTTTA
          1 TTAGAGTTTCAATTTTTA

                     *       
        228 TTAG-GTTTTAATTTTT
          1 TTAGAGTTTCAATTTTT

        244 TTTGTTCGTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.24, C:0.03, G:0.12, T:0.62


Consensus pattern (18 bp):   
TTAGAGTTTCAATTTTTA

Found at i:645 original size:3 final size:3

Alignment explanation


    Indices: 639--671  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        629 AACCACCACC

                                                       
        639 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

        672 TTCATATATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Done.