Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00929.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1775
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1729 original size:13 final size:13

Alignment explanation


    Indices: 1711--1737  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1701 TCAGCTTTTC

                         
       1711 TCATGTATTTGGA
          1 TCATGTATTTGGA

                         
       1724 TCATGTATTTGGA
          1 TCATGTATTTGGA

             
       1737 T
          1 T

       1738 GTGTTTTGGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.22, C:0.07, G:0.22, T:0.48


Consensus pattern (13 bp):   
TCATGTATTTGGA
Done.