Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00932.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:956 original size:16 final size:15

Alignment explanation


    Indices: 919--957  Score: 51
    Period size: 16  Copynumber: 2.5  Consensus size: 15

        909 TTTCCTCTCT

                           
        919 TTTTATTTTTTATTA
          1 TTTTATTTTTTATTA

                        *    
        934 TTATTATTTTTTCTGTA
          1 TT-TTATTTTTTAT-TA

                   
        951 TTTTATT
          1 TTTTATT

        958 CTAATTATTC


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  15    2  0.10
  16   15  0.71
  17    4  0.19

ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77


Consensus pattern (15 bp):   
TTTTATTTTTTATTA
Done.