Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00551.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1420
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37


Found at i:1175 original size:35 final size:35

Alignment explanation


    Indices: 1125--1194  Score: 122
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       1115 TTTTTTCTTT

                                               
       1125 TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC
          1 TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC

                      *           *            
       1160 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGACGC
          1 TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC

       1195 GGATCTGACG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  35   33  1.00

ACGTcount: A:0.13, C:0.27, G:0.34, T:0.26


Consensus pattern (35 bp):   
TTATTCTGTCACGGCTGGAGTCCTGGGCACGACGC
Done.