Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00942.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5297
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:2726 original size:33 final size:33

Alignment explanation


    Indices: 2688--2786  Score: 153
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       2678 GACTGAGTGG

                    *    *          *        
       2688 GAGTGTTTGGTTGTTGGACAGGAGTTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

                      *                      
       2721 GAGTGTTTTGCTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

             *                               
       2754 GGGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

       2787 CAAGAAGAAA


Statistics
Matches: 60,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   60  1.00

ACGTcount: A:0.17, C:0.08, G:0.41, T:0.33


Consensus pattern (33 bp):   
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Done.