Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00945.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4257
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:1900 original size:12 final size:12

Alignment explanation


    Indices: 1883--1907  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1873 CCAAGTCTCT

                        
       1883 TTTATTTATTTG
          1 TTTATTTATTTG

                        
       1895 TTTATTTATTTG
          1 TTTATTTATTTG

             
       1907 T
          1 T

       1908 CACTTCAGGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76


Consensus pattern (12 bp):   
TTTATTTATTTG
Done.