Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00949.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1722
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28


Found at i:1198 original size:18 final size:18

Alignment explanation


    Indices: 1175--1216  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1165 TGTCAGGTGT

                   *          
       1175 TATCCTAGCCCTTATATG
          1 TATCCTAACCCTTATATG

                         *    
       1193 TATCCTAACCCTTTTATG
          1 TATCCTAACCCTTATATG

             *    
       1211 TTTCCT
          1 TATCCT

       1217 TTTCCTAGTC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45


Consensus pattern (18 bp):   
TATCCTAACCCTTATATG

Found at i:1488 original size:22 final size:21

Alignment explanation


    Indices: 1463--1507  Score: 81
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1453 CCCACAACTA

                                  
       1463 AATCCCCAGCCGGAGCAACCAC
          1 AATCCCCA-CCGGAGCAACCAC

                                 
       1485 AATCCCCACCGGAGCAACCAC
          1 AATCCCCACCGGAGCAACCAC

              
       1506 AA
          1 AA

       1508 CCCTCGCCGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  21   15  0.65
  22    8  0.35

ACGTcount: A:0.36, C:0.44, G:0.16, T:0.04


Consensus pattern (21 bp):   
AATCCCCACCGGAGCAACCAC

Found at i:1517 original size:21 final size:21

Alignment explanation


    Indices: 1463--1518  Score: 78
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1453 CCCACAACTA

                                  
       1463 AATCCCCAGCCGGAGCAACCAC
          1 AATCCCC-GCCGGAGCAACCAC

                   *             
       1485 AATCCCCACCGGAGCAACCAC
          1 AATCCCCGCCGGAGCAACCAC

                          
       1506 AA-CCCTCGCCGGA
          1 AATCCC-CGCCGGA

       1519 AGCTGAACCA


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
  20    3  0.10
  21   21  0.68
  22    7  0.23

ACGTcount: A:0.30, C:0.46, G:0.18, T:0.05


Consensus pattern (21 bp):   
AATCCCCGCCGGAGCAACCAC
Done.