Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00951.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.36


Found at i:812 original size:41 final size:41

Alignment explanation


    Indices: 737--818  Score: 164
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        727 TGATATCAGC

                                                     
        737 TCACACAGGAAGCATTAGTTGGTTGGATAGACGTTTGGAGG
          1 TCACACAGGAAGCATTAGTTGGTTGGATAGACGTTTGGAGG

                                                     
        778 TCACACAGGAAGCATTAGTTGGTTGGATAGACGTTTGGAGG
          1 TCACACAGGAAGCATTAGTTGGTTGGATAGACGTTTGGAGG

        819 AAGATTCAGA


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   41  1.00

ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27


Consensus pattern (41 bp):   
TCACACAGGAAGCATTAGTTGGTTGGATAGACGTTTGGAGG
Done.