Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00953.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1581
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:688 original size:12 final size:12

Alignment explanation


    Indices: 671--712  Score: 50
    Period size: 12  Copynumber: 3.4  Consensus size: 12

        661 AATTTTTCTC

                         
        671 CCCTTT-CCTCTT
          1 CCCTTTACC-CTT

                        
        683 CCCTTTACCCTT
          1 CCCTTTACCCTT

                  *      
        695 CCCTTTGCCCTTT
          1 CCCTTTACCC-TT

                 
        708 CCCTT
          1 CCCTT

        713 GGGTTGCAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  12   18  0.67
  13    9  0.33

ACGTcount: A:0.02, C:0.50, G:0.02, T:0.45


Consensus pattern (12 bp):   
CCCTTTACCCTT
Done.