Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00555.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3128
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:853 original size:2 final size:2

Alignment explanation


    Indices: 846--879  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        836 TTCAGCATGC

                         *                                    
        846 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        880 GCGCCTTGTG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.