Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00555.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3285
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:2307 original size:62 final size:62

Alignment explanation


    Indices: 2210--2338  Score: 258
    Period size: 62  Copynumber: 2.1  Consensus size: 62

       2200 ATAAGAGCAA

                                                                          
       2210 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
          1 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG

                                                                          
       2272 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
          1 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG

                 
       2334 GGTGT
          1 GGTGT

       2339 TCTCACCGAT


Statistics
Matches: 67,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  62   67  1.00

ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39


Consensus pattern (62 bp):   
GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
Done.